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| GenBank Identifier | RefSeq Acc. | Name |
| 29566407 | NC_004686.1 | Mycobacteriophage Che9d virion |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 19563 | + | 6341 | 89 | 22 | -19.5 | NP_817982 | 5' arm 3' arm | ||
| 19654 | - | 11732 | 89 | 24.5 | -19.5 | NP_817990 | 5' arm 3' arm | ||
| 19679 | - | 26348 | 89 | 21 | -19.5 | NP_818008 | 5' arm 3' arm | ||
| 19624 | + | 43429 | 87 | 20 | -19.5 | NP_818049 | 5' arm 3' arm | ||
| 19720 | - | 51133 | 90 | 20.5 | -19.6 | NP_955481 | 5' arm 3' arm | ||
| 19591 | + | 21101 | 89 | 21.5 | -19.7 | NP_817998 | 5' arm 3' arm | ||
| 19597 | + | 24588 | 87 | 19 | -19.8 | NP_818003 | 5' arm 3' arm | ||
| 19598 | + | 25585 | 88 | 20 | -19.8 | NP_818008 | 5' arm 3' arm | ||
| 19570 | + | 9956 | 83 | 19.5 | -19.9 | NP_817990 | 5' arm 3' arm | ||
| 19717 | - | 50529 | 90 | 19.5 | -20 | 5' arm 3' arm | |||
| 19617 | + | 39157 | 88 | 20 | -20.1 | NP_818038 | 5' arm 3' arm | ||
| 19682 | - | 30017 | 88 | 21.5 | -20.2 | NP_818016 | 5' arm 3' arm | ||
| 19691 | - | 34612 | 90 | 23 | -20.2 | NP_818026 | 5' arm 3' arm | ||
| 19575 | + | 12299 | 89 | 21 | -20.3 | NP_817990 | 5' arm 3' arm | ||
| 19708 | - | 45844 | 89 | 23 | -20.3 | NP_818054 | 5' arm 3' arm | ||
| 19656 | - | 12448 | 90 | 21 | -20.3 | NP_817990 | 5' arm 3' arm | ||
| 19605 | + | 28847 | 86 | 23.5 | -20.3 | NP_818013 | 5' arm 3' arm | ||
| 19572 | + | 10485 | 90 | 21 | -20.3 | NP_817990 | 5' arm 3' arm | ||
| 19593 | + | 21898 | 87 | 23.5 | -20.4 | NP_817998 | 5' arm 3' arm | ||
| 19664 | - | 16194 | 86 | 22 | -20.5 | NP_817995 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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