miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566407 NC_004686.1 Mycobacteriophage Che9d virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
19723 - 53092 90 27 -21.1 NP_818072 5' arm      3' arm
19715 - 50023 88 20.5 -22 NP_818068 5' arm      3' arm
19712 - 47450 90 20 -23.8 NP_818059 5' arm      3' arm
19641 - 5126 89 21 -25.7 NP_817980 5' arm      3' arm
19730 - 55498 90 24 -27.1 NP_818075 5' arm      3' arm
19721 - 51713 86 24 -31.5 NP_955483 5' arm      3' arm
19722 - 52168 89 23.5 -34.9 NP_955484 5' arm      3' arm
19729 - 55366 90 22 -20.8 NP_818075 5' arm      3' arm
19731 - 55652 90 20.5 -31.1 NP_818076 5' arm      3' arm
19720 - 51133 90 20.5 -19.6 NP_955481 5' arm      3' arm
19718 - 50679 84 22.5 -21.8 NP_955479 5' arm      3' arm
19728 - 54415 89 21.5 -22.8 NP_818074 5' arm      3' arm
19725 - 53601 89 26 -25.9 NP_818073 5' arm      3' arm
19719 - 50909 87 21 -29.5 NP_955480 5' arm      3' arm
19724 - 53348 89 25 -20.7 NP_818073 5' arm      3' arm
19727 - 54306 90 22 -23.3 NP_818074 5' arm      3' arm
19716 - 50275 90 21 -20.7 NP_818069 5' arm      3' arm
19714 - 49405 90 20 -22.1 NP_818065 5' arm      3' arm
19732 - 55771 88 24 -21.1 NP_818076 5' arm      3' arm
19726 - 54166 89 23.5 -22.4 NP_818074 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.