miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
27311175 NC_004456.1 Vibrio harveyi bacteriophage VHML

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17492 + 36110 86 19.5 -22.1 NP_758935 5' arm      3' arm
17491 + 35623 83 20 -22.3 NP_758934 5' arm      3' arm
17470 + 7338 87 23 -22.5 NP_758900 5' arm      3' arm
17497 + 42590 90 24 -22.7 NP_758949 5' arm      3' arm
17468 + 3113 87 21 -22.8 NP_758897 5' arm      3' arm
17508 - 22793 90 23.5 -22.9 NP_758920 5' arm      3' arm
17500 - 6862 87 20 -22.9 NP_758899 5' arm      3' arm
17499 - 4260 88 20 -23.07 NP_758897 5' arm      3' arm
17489 + 34668 87 23.5 -23.3 NP_758934 5' arm      3' arm
17493 + 36720 89 23 -23.4 NP_758937 5' arm      3' arm
17485 + 26753 84 21 -23.4 NP_758927 5' arm      3' arm
17482 + 24494 88 19.5 -23.5 5' arm      3' arm
17512 - 32297 89 22.5 -23.6 5' arm      3' arm
17511 - 30263 89 20 -23.6 NP_758930 5' arm      3' arm
17473 + 12417 89 21 -23.8 5' arm      3' arm
17476 + 17307 90 20.5 -24.5 NP_758915 5' arm      3' arm
17517 - 41327 87 19 -24.66 5' arm      3' arm
17509 - 28023 89 24.5 -25 NP_758928 5' arm      3' arm
17488 + 34178 89 21.5 -25.2 NP_758934 5' arm      3' arm
17502 - 15903 89 23 -25.2 NP_758914 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.