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GenBank Identifier | RefSeq Acc. | Name |
38638403 | NC_005259.1 | Mycobacteriophage PG1 virion |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
23185 | + | 350 | 90 | 19 | -23.4 | NP_943779 | 5' arm 3' arm | ||
23186 | + | 572 | 89 | 20 | -29.9 | NP_943780 | 5' arm 3' arm | ||
23187 | + | 2187 | 89 | 20.5 | -23 | NP_943780 | 5' arm 3' arm | ||
23188 | + | 2494 | 88 | 21.5 | -27.7 | NP_943781 | 5' arm 3' arm | ||
23189 | + | 2773 | 85 | 21 | -32.3 | NP_943782 | 5' arm 3' arm | ||
23190 | + | 3336 | 87 | 21 | -21.6 | NP_943784 | 5' arm 3' arm | ||
23191 | + | 3454 | 87 | 24 | -25.6 | NP_943784 | 5' arm 3' arm | ||
23192 | + | 4385 | 88 | 20.5 | -19.6 | 5' arm 3' arm | |||
23193 | + | 4759 | 89 | 22 | -22 | NP_943786 | 5' arm 3' arm | ||
23194 | + | 5451 | 90 | 20 | -24.1 | NP_943786 | 5' arm 3' arm | ||
23195 | + | 6233 | 88 | 20 | -25.3 | NP_943786 | 5' arm 3' arm | ||
23196 | + | 6466 | 80 | 22 | -22 | NP_943787 | 5' arm 3' arm | ||
23197 | + | 6726 | 89 | 20 | -23.8 | NP_943787 | 5' arm 3' arm | ||
23198 | + | 7189 | 87 | 23.5 | -25.6 | NP_943787 | 5' arm 3' arm | ||
23199 | + | 7347 | 89 | 20 | -21.3 | NP_943787 | 5' arm 3' arm | ||
23200 | + | 7746 | 85 | 21 | -22.7 | NP_943787 | 5' arm 3' arm | ||
23201 | + | 8060 | 88 | 19 | -20.7 | NP_943787 | 5' arm 3' arm | ||
23202 | + | 8412 | 88 | 20 | -26.8 | NP_943787 | 5' arm 3' arm | ||
23203 | + | 8529 | 90 | 19 | -24.3 | NP_943787 | 5' arm 3' arm | ||
23204 | + | 9300 | 88 | 20.5 | -29.8 | NP_943788 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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