miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38638403 NC_005259.1 Mycobacteriophage PG1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23368 - 5860 90 26.5 -34.5 NP_943786 5' arm      3' arm
23302 + 50342 90 25.5 -24.8 NP_943837 5' arm      3' arm
23328 + 60391 89 25.5 -26.9 NP_943853 5' arm      3' arm
23435 - 30097 89 25 -21.4 NP_943809 5' arm      3' arm
23407 - 21096 89 25 -23.7 NP_943806 5' arm      3' arm
23429 - 28974 88 25 -22.1 NP_943809 5' arm      3' arm
23384 - 12747 89 25 -25.5 NP_943792 5' arm      3' arm
23222 + 16368 85 25 -20.9 NP_943798 5' arm      3' arm
23240 + 25805 89 25 -27.9 NP_943806 5' arm      3' arm
23274 + 40243 90 25 -25.2 NP_943826 5' arm      3' arm
23471 - 42752 90 24.5 -20.7 NP_943828 5' arm      3' arm
23279 + 42384 90 24.5 -29.7 NP_943828 5' arm      3' arm
23403 - 19241 89 24.5 -29.9 NP_943804 5' arm      3' arm
23463 - 40022 88 24.5 -31.3 NP_943826 5' arm      3' arm
23488 - 52306 89 24.5 -19.8 NP_943838 5' arm      3' arm
23297 + 49173 90 24.5 -21.8 5' arm      3' arm
23386 - 13951 89 24.5 -28.3 NP_943794 5' arm      3' arm
23499 - 58049 89 24.5 -27.5 NP_943848 5' arm      3' arm
23342 + 66102 88 24.5 -20.7 5' arm      3' arm
23208 + 11274 90 24.5 -28.7 NP_943790 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.