miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38638403 NC_005259.1 Mycobacteriophage PG1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23364 - 3886 90 20 -22.8 NP_943784 5' arm      3' arm
23190 + 3336 87 21 -21.6 NP_943784 5' arm      3' arm
23191 + 3454 87 24 -25.6 NP_943784 5' arm      3' arm
23365 - 4163 90 20.5 -22.1 NP_943785 5' arm      3' arm
23367 - 5638 83 21 -24.5 NP_943786 5' arm      3' arm
23370 - 6353 86 19 -27.3 NP_943786 5' arm      3' arm
23193 + 4759 89 22 -22 NP_943786 5' arm      3' arm
23369 - 6097 90 21 -28.1 NP_943786 5' arm      3' arm
23194 + 5451 90 20 -24.1 NP_943786 5' arm      3' arm
23195 + 6233 88 20 -25.3 NP_943786 5' arm      3' arm
23368 - 5860 90 26.5 -34.5 NP_943786 5' arm      3' arm
23366 - 4756 90 22 -26.6 NP_943786 5' arm      3' arm
23373 - 8253 88 20 -19.5 NP_943787 5' arm      3' arm
23374 - 8913 90 23.5 -21.7 NP_943787 5' arm      3' arm
23372 - 7942 88 23.5 -28.6 NP_943787 5' arm      3' arm
23203 + 8529 90 19 -24.3 NP_943787 5' arm      3' arm
23198 + 7189 87 23.5 -25.6 NP_943787 5' arm      3' arm
23201 + 8060 88 19 -20.7 NP_943787 5' arm      3' arm
23196 + 6466 80 22 -22 NP_943787 5' arm      3' arm
23200 + 7746 85 21 -22.7 NP_943787 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.