miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38638403 NC_005259.1 Mycobacteriophage PG1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23362 - 3282 89 21.5 -36.7 5' arm      3' arm
23355 - 1101 87 20 -20.2 5' arm      3' arm
23318 + 56226 90 21 -26.5 5' arm      3' arm
23375 - 9499 89 24 -21.9 5' arm      3' arm
23192 + 4385 88 20.5 -19.6 5' arm      3' arm
23352 - 314 90 21 -28 NP_943779 5' arm      3' arm
23185 + 350 90 19 -23.4 NP_943779 5' arm      3' arm
23186 + 572 89 20 -29.9 NP_943780 5' arm      3' arm
23358 - 2070 88 22.5 -26.8 NP_943780 5' arm      3' arm
23187 + 2187 89 20.5 -23 NP_943780 5' arm      3' arm
23359 - 2275 89 21 -23 NP_943780 5' arm      3' arm
23357 - 1875 85 21 -21.5 NP_943780 5' arm      3' arm
23356 - 1349 87 19 -24.3 NP_943780 5' arm      3' arm
23354 - 1000 89 24 -31 NP_943780 5' arm      3' arm
23353 - 630 89 20.5 -19.6 NP_943780 5' arm      3' arm
23188 + 2494 88 21.5 -27.7 NP_943781 5' arm      3' arm
23361 - 2630 88 19.5 -33.7 NP_943781 5' arm      3' arm
23360 - 2523 89 19.5 -29.3 NP_943781 5' arm      3' arm
23189 + 2773 85 21 -32.3 NP_943782 5' arm      3' arm
23363 - 3708 86 20.5 -27.3 NP_943784 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.