miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38638403 NC_005259.1 Mycobacteriophage PG1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23332 + 62889 85 22.5 -23.7 NP_943860 5' arm      3' arm
23511 - 62751 87 21.5 -34.5 NP_943859 5' arm      3' arm
23330 + 62337 81 20.5 -19.5 NP_943858 5' arm      3' arm
23329 + 60884 86 19.5 -24.7 NP_943854 5' arm      3' arm
23508 - 60612 89 24 -28.6 NP_943853 5' arm      3' arm
23506 - 60400 90 22 -22.6 NP_943853 5' arm      3' arm
23328 + 60391 89 25.5 -26.9 NP_943853 5' arm      3' arm
23507 - 60519 90 19.5 -21.2 NP_943853 5' arm      3' arm
23505 - 60082 89 24 -27.2 NP_943852 5' arm      3' arm
23327 + 59529 87 23.5 -22.2 NP_943850 5' arm      3' arm
23324 + 58802 90 22 -23.7 NP_943849 5' arm      3' arm
23504 - 59310 87 20.5 -21.6 NP_943849 5' arm      3' arm
23503 - 59142 89 20 -29.3 NP_943849 5' arm      3' arm
23326 + 59102 82 20.5 -29 NP_943849 5' arm      3' arm
23325 + 58992 87 19 -20.4 NP_943849 5' arm      3' arm
23502 - 58762 90 22.5 -23.5 NP_943849 5' arm      3' arm
23500 - 58281 87 21.5 -27.1 NP_943848 5' arm      3' arm
23499 - 58049 89 24.5 -27.5 NP_943848 5' arm      3' arm
23501 - 58371 88 20.5 -26.2 NP_943848 5' arm      3' arm
23322 + 58085 84 23 -21.5 NP_943848 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.