miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38638403 NC_005259.1 Mycobacteriophage PG1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23350 + 68333 83 23 -24.9 NP_943877 5' arm      3' arm
23349 + 68211 88 20 -30.9 NP_943876 5' arm      3' arm
23347 + 67677 89 21.5 -22.6 NP_943875 5' arm      3' arm
23348 + 67780 86 20 -20.5 NP_943875 5' arm      3' arm
23346 + 67509 90 19 -31 NP_943874 5' arm      3' arm
23516 - 67565 88 21 -23.2 NP_943874 5' arm      3' arm
23515 - 66926 87 22 -27.1 NP_943873 5' arm      3' arm
23345 + 66684 87 20.5 -37.4 NP_943873 5' arm      3' arm
23344 + 66416 89 24 -21 NP_943872 5' arm      3' arm
23343 + 66215 90 20 -19.9 NP_943872 5' arm      3' arm
23341 + 65983 90 21 -20.9 NP_943871 5' arm      3' arm
23340 + 65891 90 23.5 -24.61 NP_943871 5' arm      3' arm
23339 + 65677 89 21 -28.4 NP_943870 5' arm      3' arm
23514 - 64880 78 19 -26.1 NP_943867 5' arm      3' arm
23338 + 64713 88 20.5 -27.8 NP_943867 5' arm      3' arm
23513 - 64666 89 19.5 -27 NP_943866 5' arm      3' arm
23512 - 64557 90 20.5 -26 NP_943866 5' arm      3' arm
23337 + 64530 87 23 -29.1 NP_943866 5' arm      3' arm
23336 + 63872 89 19.5 -24.1 NP_943863 5' arm      3' arm
23334 + 63455 89 21 -23 NP_943861 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.