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GenBank Identifier | RefSeq Acc. | Name |
38638403 | NC_005259.1 | Mycobacteriophage PG1 virion |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
23207 | + | 11113 | 89 | 19.5 | -19.8 | NP_943790 | 5' arm 3' arm | ||
23264 | + | 36678 | 85 | 19.5 | -22.8 | NP_943818 | 5' arm 3' arm | ||
23465 | - | 40372 | 89 | 19.5 | -28.5 | NP_943826 | 5' arm 3' arm | ||
23230 | + | 20891 | 89 | 19.5 | -23.6 | NP_943806 | 5' arm 3' arm | ||
23329 | + | 60884 | 86 | 19.5 | -24.7 | NP_943854 | 5' arm 3' arm | ||
23213 | + | 12453 | 89 | 19.5 | -21.8 | NP_943792 | 5' arm 3' arm | ||
23231 | + | 21107 | 86 | 19.5 | -24.9 | NP_943806 | 5' arm 3' arm | ||
23472 | - | 42988 | 89 | 20 | -20.2 | NP_943828 | 5' arm 3' arm | ||
23451 | - | 35250 | 85 | 20 | -26.7 | NP_943815 | 5' arm 3' arm | ||
23470 | - | 42473 | 90 | 20 | -23.4 | NP_943828 | 5' arm 3' arm | ||
23348 | + | 67780 | 86 | 20 | -20.5 | NP_943875 | 5' arm 3' arm | ||
23300 | + | 49985 | 89 | 20 | -28.6 | NP_943837 | 5' arm 3' arm | ||
23343 | + | 66215 | 90 | 20 | -19.9 | NP_943872 | 5' arm 3' arm | ||
23211 | + | 12000 | 87 | 20 | -25.6 | NP_943791 | 5' arm 3' arm | ||
23349 | + | 68211 | 88 | 20 | -30.9 | NP_943876 | 5' arm 3' arm | ||
23228 | + | 19963 | 90 | 20 | -19.5 | NP_943805 | 5' arm 3' arm | ||
23195 | + | 6233 | 88 | 20 | -25.3 | NP_943786 | 5' arm 3' arm | ||
23483 | - | 48647 | 89 | 20 | -32.3 | NP_943835 | 5' arm 3' arm | ||
23333 | + | 63078 | 88 | 20 | -25.8 | 5' arm 3' arm | |||
23194 | + | 5451 | 90 | 20 | -24.1 | NP_943786 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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