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GenBank Identifier | RefSeq Acc. | Name |
32453825 | NC_004927.1 | Halovirus HF1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
22035 | + | 14427 | 88 | 19 | -26.5 | 5' arm 3' arm | |||
22177 | - | 64228 | 84 | 21.5 | -26.5 | NP_861675 | 5' arm 3' arm | ||
22158 | - | 54222 | 86 | 21 | -26.4 | NP_861662 | 5' arm 3' arm | ||
22078 | + | 47340 | 90 | 19.5 | -26.3 | NP_861655 | 5' arm 3' arm | ||
22087 | + | 63845 | 90 | 23 | -26.2 | NP_861675 | 5' arm 3' arm | ||
22046 | + | 22442 | 90 | 21 | -26.2 | NP_861624 | 5' arm 3' arm | ||
22194 | - | 75526 | 89 | 23 | -26.1 | NP_861690 | 5' arm 3' arm | ||
22183 | - | 68548 | 89 | 22.5 | -25.9 | NP_861679 | 5' arm 3' arm | ||
22186 | - | 69589 | 82 | 20.5 | -25.9 | NP_861681 | 5' arm 3' arm | ||
22118 | - | 20317 | 89 | 21 | -25.9 | NP_861620 | 5' arm 3' arm | ||
22044 | + | 20033 | 89 | 19.5 | -25.9 | NP_861619 | 5' arm 3' arm | ||
22063 | + | 35106 | 90 | 20 | -25.7 | NP_861644 | 5' arm 3' arm | ||
22069 | + | 38038 | 86 | 21.5 | -25.7 | NP_861650 | 5' arm 3' arm | ||
22081 | + | 54767 | 90 | 21.5 | -25.4 | NP_861664 | 5' arm 3' arm | ||
22053 | + | 28713 | 85 | 20 | -25.4 | NP_861634 | 5' arm 3' arm | ||
22049 | + | 24458 | 83 | 20 | -25.2 | NP_861625 | 5' arm 3' arm | ||
22040 | + | 16717 | 86 | 19 | -25.2 | NP_861616 | 5' arm 3' arm | ||
22068 | + | 37674 | 89 | 23.5 | -25.1 | NP_861650 | 5' arm 3' arm | ||
22079 | + | 47976 | 89 | 20 | -25 | NP_861656 | 5' arm 3' arm | ||
22097 | + | 75067 | 89 | 20 | -24.9 | NP_861690 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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