miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38640309 NC_005262.1 Burkholderia cepacia phage Bcep22

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23969 + 63714 89 19 -23.3 NP_944308 5' arm      3' arm
24109 - 63722 90 19.5 -26.1 NP_944308 5' arm      3' arm
24108 - 62889 90 20 -27.5 NP_944307 5' arm      3' arm
23967 + 62578 88 21.5 -29.5 NP_944306 5' arm      3' arm
24107 - 61952 87 23 -28.1 NP_944304 5' arm      3' arm
23959 + 55680 85 19.5 -32.7 NP_944303 5' arm      3' arm
23956 + 52997 90 19 -34 NP_944303 5' arm      3' arm
23951 + 49386 88 20.5 -31 NP_944303 5' arm      3' arm
23965 + 60689 88 22 -21.24 NP_944303 5' arm      3' arm
23961 + 57680 90 19 -27.6 NP_944303 5' arm      3' arm
23952 + 49953 84 19.5 -23.7 NP_944303 5' arm      3' arm
24098 - 59122 90 23.5 -25.9 NP_944303 5' arm      3' arm
23953 + 50864 89 19.5 -33.9 NP_944303 5' arm      3' arm
23950 + 48725 77 19 -29.2 NP_944303 5' arm      3' arm
23964 + 59748 89 22 -32.5 NP_944303 5' arm      3' arm
23962 + 57821 89 22 -30 NP_944303 5' arm      3' arm
23963 + 58777 84 21 -21 NP_944303 5' arm      3' arm
23955 + 52218 90 19.5 -24.7 NP_944303 5' arm      3' arm
23957 + 54373 86 19.5 -21.2 NP_944303 5' arm      3' arm
23954 + 52021 87 19.5 -22.1 NP_944303 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.