miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38640309 NC_005262.1 Burkholderia cepacia phage Bcep22

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23928 + 34808 89 19 -20.8 NP_944288 5' arm      3' arm
23910 + 24978 90 19 -23.1 NP_944277 5' arm      3' arm
23906 + 19815 89 19 -29.6 NP_944262 5' arm      3' arm
23943 + 43735 90 19 -24.6 NP_944297 5' arm      3' arm
24046 - 39558 89 19 -23.1 NP_944293 5' arm      3' arm
23915 + 26864 86 19 -20.4 5' arm      3' arm
24100 - 59359 90 19 -26.2 NP_944303 5' arm      3' arm
23950 + 48725 77 19 -29.2 NP_944303 5' arm      3' arm
24081 - 54494 90 19 -21.5 5' arm      3' arm
23959 + 55680 85 19.5 -32.7 NP_944303 5' arm      3' arm
23952 + 49953 84 19.5 -23.7 NP_944303 5' arm      3' arm
23960 + 55914 83 19.5 -25.1 NP_944303 5' arm      3' arm
24090 - 56802 87 19.5 -30 NP_944303 5' arm      3' arm
24109 - 63722 90 19.5 -26.1 NP_944308 5' arm      3' arm
23958 + 54990 89 19.5 -26.5 NP_944303 5' arm      3' arm
24093 - 57332 89 19.5 -27.2 NP_944303 5' arm      3' arm
23953 + 50864 89 19.5 -33.9 NP_944303 5' arm      3' arm
24099 - 59264 90 19.5 -23.1 NP_944303 5' arm      3' arm
24092 - 57190 84 19.5 -23.1 NP_944303 5' arm      3' arm
23879 + 6617 87 19.5 -30.1 NP_944240 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.