miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
34610128 NC_005091.1 Burkholderia cepacia phage BcepNazgul

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
22551 + 63 89 22 -26.5 5' arm      3' arm
22552 + 727 87 23 -20.5 5' arm      3' arm
22553 + 1273 90 20 -26.1 5' arm      3' arm
22554 + 1822 90 19.5 -19.8 5' arm      3' arm
22555 + 2094 90 19 -19.9 5' arm      3' arm
22556 + 2589 89 19 -26 5' arm      3' arm
22557 + 3322 90 20.5 -20.7 5' arm      3' arm
22558 + 4813 89 20 -27 5' arm      3' arm
22559 + 5081 90 22.5 -20 5' arm      3' arm
22560 + 5414 87 19.5 -22.5 5' arm      3' arm
22561 + 6615 90 19 -22.1 5' arm      3' arm
22562 + 8055 89 19 -24 5' arm      3' arm
22563 + 8245 90 19.5 -21.1 5' arm      3' arm
22564 + 10805 87 21.5 -24.9 5' arm      3' arm
22565 + 12955 88 20 -27.4 5' arm      3' arm
22566 + 13470 90 20.5 -23.5 5' arm      3' arm
22567 + 13870 90 20.5 -34.8 5' arm      3' arm
22568 + 14051 90 22.5 -19.6 5' arm      3' arm
22569 + 14204 87 21 -22.3 5' arm      3' arm
22570 + 16420 90 22.5 -26.1 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.