miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38707890 NC_005284.1 Bacteriophage phi1026b

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
24932 - 22108 85 22 -36.8 5' arm      3' arm
24820 + 8232 90 23 -35.6 NP_945043 5' arm      3' arm
24938 - 25619 90 20 -32.3 NP_945061 5' arm      3' arm
24944 - 31570 84 20 -32.3 NP_945069 5' arm      3' arm
24903 - 1215 88 23.5 -32.1 NP_945032 5' arm      3' arm
24816 + 6799 89 20.5 -31.9 NP_945039 5' arm      3' arm
24823 + 10027 86 20.5 -31.7 NP_945044 5' arm      3' arm
24970 - 54079 89 21.5 -31.5 NP_945111 5' arm      3' arm
24952 - 37204 84 22.5 -31.5 NP_945079 5' arm      3' arm
24873 + 35351 87 23.5 -30.5 NP_945077 5' arm      3' arm
24915 - 10623 89 22 -30.2 NP_945044 5' arm      3' arm
24925 - 17070 88 22 -30.1 NP_945050 5' arm      3' arm
24847 + 19796 88 20 -29.8 NP_945051 5' arm      3' arm
24949 - 35432 81 20.5 -29.7 NP_945077 5' arm      3' arm
24874 + 36360 88 24.5 -29.7 NP_945078 5' arm      3' arm
24884 + 43275 81 19 -29.7 NP_945092 5' arm      3' arm
24960 - 46946 84 22.5 -29.6 NP_945098 5' arm      3' arm
24931 - 21626 90 23 -29.5 NP_945055 5' arm      3' arm
24961 - 47262 89 23 -29.4 NP_945099 5' arm      3' arm
24830 + 12237 87 23 -29.3 NP_945044 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.