miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38707890 NC_005284.1 Bacteriophage phi1026b

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
24861 + 30427 88 26.5 -21.7 NP_945068 5' arm      3' arm
24867 + 32775 88 26 -24.8 NP_945073 5' arm      3' arm
24826 + 10445 89 26 -26.3 NP_945044 5' arm      3' arm
24927 - 18312 90 25.5 -22.8 NP_945050 5' arm      3' arm
24912 - 8977 90 25 -24.3 NP_945044 5' arm      3' arm
24874 + 36360 88 24.5 -29.7 NP_945078 5' arm      3' arm
24965 - 49498 90 24.5 -26.4 NP_945103 5' arm      3' arm
24882 + 41170 81 23.5 -25 NP_945089 5' arm      3' arm
24903 - 1215 88 23.5 -32.1 NP_945032 5' arm      3' arm
24924 - 16670 90 23.5 -20.4 NP_945050 5' arm      3' arm
24873 + 35351 87 23.5 -30.5 NP_945077 5' arm      3' arm
24818 + 7046 87 23.5 -24.9 NP_945040 5' arm      3' arm
24878 + 38787 87 23 -19.9 NP_945083 5' arm      3' arm
24931 - 21626 90 23 -29.5 NP_945055 5' arm      3' arm
24830 + 12237 87 23 -29.3 NP_945044 5' arm      3' arm
24807 + 901 86 23 -22.2 NP_945032 5' arm      3' arm
24820 + 8232 90 23 -35.6 NP_945043 5' arm      3' arm
24961 - 47262 89 23 -29.4 NP_945099 5' arm      3' arm
24890 + 46621 89 22.5 -24.5 NP_945098 5' arm      3' arm
24893 + 47998 89 22.5 -21.8 NP_945100 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.