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| GenBank Identifier | RefSeq Acc. | Name |
| 47842848 | NC_005342.2 | Burkholderia cepacia phage Bcep43 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 26109 | + | 40038 | 88 | 19 | -24.04 | YP_022749 | 5' arm 3' arm | ||
| 26124 | + | 47779 | 90 | 23.5 | -25.9 | NP_958170 | 5' arm 3' arm | ||
| 26236 | - | 47473 | 90 | 19 | -22 | NP_958169 | 5' arm 3' arm | ||
| 26122 | + | 47476 | 90 | 19 | -20.6 | NP_958169 | 5' arm 3' arm | ||
| 26121 | + | 47346 | 90 | 21.5 | -24.7 | NP_958169 | 5' arm 3' arm | ||
| 26235 | - | 46636 | 89 | 21.5 | -24.1 | NP_958168 | 5' arm 3' arm | ||
| 26234 | - | 46522 | 90 | 23 | -21.9 | NP_958168 | 5' arm 3' arm | ||
| 26233 | - | 45943 | 88 | 19 | -25.7 | NP_958167 | 5' arm 3' arm | ||
| 26227 | - | 44611 | 90 | 22.5 | -23.7 | NP_958166 | 5' arm 3' arm | ||
| 26228 | - | 44819 | 90 | 24 | -30.8 | NP_958166 | 5' arm 3' arm | ||
| 26118 | + | 44877 | 90 | 22 | -25 | NP_958166 | 5' arm 3' arm | ||
| 26232 | - | 45733 | 88 | 19 | -27.5 | NP_958166 | 5' arm 3' arm | ||
| 26120 | + | 45309 | 87 | 22.5 | -26.8 | NP_958166 | 5' arm 3' arm | ||
| 26117 | + | 44523 | 88 | 20.5 | -21.43 | NP_958166 | 5' arm 3' arm | ||
| 26229 | - | 44924 | 90 | 19.5 | -20.9 | NP_958166 | 5' arm 3' arm | ||
| 26116 | + | 43983 | 90 | 19.5 | -23.2 | NP_958166 | 5' arm 3' arm | ||
| 26225 | - | 44039 | 87 | 21.5 | -21.7 | NP_958166 | 5' arm 3' arm | ||
| 26231 | - | 45530 | 83 | 23 | -23.5 | NP_958166 | 5' arm 3' arm | ||
| 26119 | + | 45120 | 88 | 19 | -28.4 | NP_958166 | 5' arm 3' arm | ||
| 26230 | - | 45415 | 88 | 20 | -24.5 | NP_958166 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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