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| GenBank Identifier | RefSeq Acc. | Name |
| 11038431 | NC_001875.2 | Orgyia pseudotsugata multicapsid nucleopolyhedrovirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 7025 | - | 130407 | 88 | 23 | -19.4 | 5' arm 3' arm | |||
| 6943 | - | 52522 | 90 | 19 | -19.4 | NP_046221 | 5' arm 3' arm | ||
| 6781 | + | 50333 | 89 | 24 | -19.4 | NP_046219 | 5' arm 3' arm | ||
| 6944 | - | 52660 | 87 | 23.5 | -19.5 | NP_046221 | 5' arm 3' arm | ||
| 6854 | + | 110698 | 87 | 20.5 | -19.5 | NP_046287 | 5' arm 3' arm | ||
| 6767 | + | 39610 | 88 | 22.5 | -19.6 | NP_046206 | 5' arm 3' arm | ||
| 6782 | + | 50924 | 87 | 21.5 | -19.7 | NP_046220 | 5' arm 3' arm | ||
| 6863 | + | 117729 | 88 | 23 | -19.7 | 5' arm 3' arm | |||
| 6889 | - | 9344 | 90 | 21.5 | -19.7 | NP_046169 | 5' arm 3' arm | ||
| 6861 | + | 116660 | 89 | 21.5 | -19.7 | NP_046293 | 5' arm 3' arm | ||
| 6893 | - | 12400 | 88 | 19 | -19.8 | NP_046172 | 5' arm 3' arm | ||
| 6856 | + | 113569 | 90 | 24 | -19.8 | NP_046290 | 5' arm 3' arm | ||
| 6947 | - | 54278 | 89 | 19.5 | -19.8 | NP_046225 | 5' arm 3' arm | ||
| 6896 | - | 17773 | 89 | 20 | -19.8 | NP_046177 | 5' arm 3' arm | ||
| 6887 | - | 8513 | 85 | 21.5 | -19.8 | NP_046168 | 5' arm 3' arm | ||
| 7006 | - | 110616 | 85 | 23.5 | -19.82 | NP_046287 | 5' arm 3' arm | ||
| 7012 | - | 114306 | 90 | 21 | -19.9 | NP_046290 | 5' arm 3' arm | ||
| 6841 | + | 96874 | 90 | 22 | -19.9 | NP_046274 | 5' arm 3' arm | ||
| 6763 | + | 37230 | 90 | 20 | -20 | NP_046202 | 5' arm 3' arm | ||
| 6980 | - | 87411 | 88 | 22 | -20 | NP_046261 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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