miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
30626	+	139659	87	19	-23.4	YP_164257		5' arm      3' arm
30625	+	139432	90	21	-24.1	YP_164257		5' arm      3' arm
30624	+	132995	89	21	-24.7	YP_164249		5' arm      3' arm
30622	+	131623	90	22	-26.5	YP_164247		5' arm      3' arm
30623	+	131833	87	24.5	-22.9	YP_164247		5' arm      3' arm
30670	-	131691	89	21.5	-26.2	YP_164247		5' arm      3' arm
30621	+	130215	87	20	-24.8	YP_164245		5' arm      3' arm
30669	-	130130	88	21.5	-23	YP_164245		5' arm      3' arm
30668	-	124000	90	22.5	-25.8	YP_164236		5' arm      3' arm
30665	-	122118	89	23.5	-22.9	YP_164235		5' arm      3' arm
30664	-	120080	88	23	-21.7	YP_164232		5' arm      3' arm
30663	-	119620	90	23	-19.8	YP_164232		5' arm      3' arm
30662	-	119176	88	22.5	-22.6	YP_164231		5' arm      3' arm
30620	+	117311	89	22.5	-34.4	YP_164228		5' arm      3' arm
30619	+	116914	85	19.5	-21.6	YP_164227		5' arm      3' arm
30659	-	113461	82	19	-24.3	YP_164223		5' arm      3' arm
30660	-	114758	90	21	-25.2	YP_164223		3' arm
30616	+	107914	87	22.5	-23	YP_164218		5' arm      3' arm
30658	-	107564	82	21	-20	YP_164217		5' arm      3' arm
30615	+	106290	90	21	-22.4	YP_164215		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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