miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
30658	-	107564	82	21	-20	YP_164217		5' arm      3' arm
30627	-	549	86	21	-22.5			3' arm
30657	-	104552	87	22	-28			5' arm      3' arm
30654	-	102097	89	25.5	-29.1	YP_164208		5' arm      3' arm
30607	+	78783	89	21	-22.6	YP_164178		5' arm      3' arm
30583	+	12656	89	19.5	-23.3	YP_164109		5' arm      3' arm
30582	+	10249	88	20.5	-25.5	YP_164107		5' arm      3' arm
30626	+	139659	87	19	-23.4	YP_164257		5' arm      3' arm
30625	+	139432	90	21	-24.1	YP_164257		5' arm      3' arm
30624	+	132995	89	21	-24.7	YP_164249		5' arm      3' arm
30604	+	76220	86	20.5	-21	YP_164176		5' arm      3' arm
30605	+	76676	88	20	-19.6	YP_164176		5' arm      3' arm
30608	+	79406	86	22	-25.1	YP_164179		5' arm      3' arm
30602	+	71904	89	20.5	-22.7	YP_164171		5' arm      3' arm
30601	+	60348	82	20	-22.6	YP_164159		5' arm      3' arm
30600	+	59564	90	22.5	-25.4	YP_164159		5' arm      3' arm
30591	+	41973	80	20	-26.3	YP_164142		5' arm      3' arm
30590	+	41113	90	20	-28.7	YP_164141		5' arm      3' arm
30589	+	37597	88	22	-20.1	YP_164136		5' arm      3' arm
30588	+	36387	88	19	-31.4	YP_164135		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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