miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45429963 NC_005808.1 Bordetella phage BMP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26813 - 42492 87 20.5 -27.5 NP_996610 5' arm      3' arm
26812 - 42294 90 19.5 -27.7 NP_996610 5' arm      3' arm
26811 - 42062 87 22 -26.1 NP_996610 5' arm      3' arm
26810 - 41587 90 22.5 -29.2 NP_996610 5' arm      3' arm
26809 - 40932 89 21 -24.9 NP_996608 5' arm      3' arm
26808 - 40785 89 21 -22.2 NP_996608 5' arm      3' arm
26807 - 40337 90 24.5 -33.4 NP_996608 5' arm      3' arm
26806 - 40129 87 21 -23.4 NP_996608 5' arm      3' arm
26805 - 39680 90 19.5 -20.7 NP_996607 5' arm      3' arm
26804 - 39226 88 20.5 -22.9 5' arm      3' arm
26803 - 38986 88 20.5 -21 NP_996605 5' arm      3' arm
26802 - 38455 89 23 -25.4 NP_996604 5' arm      3' arm
26801 - 38297 83 20.5 -26.6 NP_996604 5' arm      3' arm
26800 - 38161 90 20 -23.7 NP_996604 5' arm      3' arm
26799 - 38055 86 22 -24.3 NP_996604 5' arm      3' arm
26798 - 37586 80 21.5 -34.1 NP_996604 5' arm      3' arm
26797 - 37468 88 23.5 -20 NP_996604 5' arm      3' arm
26796 - 37227 82 23 -20.7 NP_996604 5' arm      3' arm
26795 - 37030 87 22 -22.6 NP_996604 5' arm      3' arm
26794 - 36901 90 21.5 -20.7 NP_996604 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.