miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45429963 NC_005808.1 Bordetella phage BMP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26767 - 29010 86 21 -19.4 NP_996591 5' arm      3' arm
26654 + 9378 90 21 -19.4 NP_996572 5' arm      3' arm
26769 - 29578 90 22.5 -19.5 NP_996591 5' arm      3' arm
26776 - 32296 88 19.5 -19.6 NP_996596 5' arm      3' arm
26691 + 19919 85 19.5 -19.6 NP_996580 5' arm      3' arm
26744 - 15320 86 19 -19.8 NP_996575 5' arm      3' arm
26662 + 12160 90 21 -19.8 NP_996572 5' arm      3' arm
26687 + 18940 89 20.5 -19.8 NP_996579 5' arm      3' arm
26762 - 26490 86 19 -19.9 NP_996589 5' arm      3' arm
26792 - 36199 90 19.5 -20 NP_996602 5' arm      3' arm
26797 - 37468 88 23.5 -20 NP_996604 5' arm      3' arm
26639 + 4033 83 23.5 -20 NP_996570 5' arm      3' arm
26670 + 13988 82 21 -20.02 NP_996573 5' arm      3' arm
26696 + 21397 90 19.5 -20.1 NP_996583 5' arm      3' arm
26789 - 35877 88 19.5 -20.1 NP_996602 5' arm      3' arm
26672 + 14923 89 22 -20.2 NP_996574 5' arm      3' arm
26787 - 35343 89 23 -20.2 NP_996600 5' arm      3' arm
26743 - 11144 90 22 -20.2 NP_996572 5' arm      3' arm
26648 + 5692 90 21.5 -20.3 NP_996571 5' arm      3' arm
26753 - 19002 89 19.5 -20.3 NP_996579 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.