miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45429963 NC_005808.1 Bordetella phage BMP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26808 - 40785 89 21 -22.2 NP_996608 5' arm      3' arm
26773 - 31750 90 22 -21.9 NP_996595 5' arm      3' arm
26756 - 22048 88 20.5 -22.4 NP_996583 5' arm      3' arm
26758 - 23953 90 22.5 -25.6 NP_996586 5' arm      3' arm
26769 - 29578 90 22.5 -19.5 NP_996591 5' arm      3' arm
26788 - 35705 90 25.5 -22.4 NP_996601 5' arm      3' arm
26809 - 40932 89 21 -24.9 NP_996608 5' arm      3' arm
26799 - 38055 86 22 -24.3 NP_996604 5' arm      3' arm
26785 - 34425 87 22.5 -25.5 NP_996600 5' arm      3' arm
26792 - 36199 90 19.5 -20 NP_996602 5' arm      3' arm
26791 - 36104 90 20 -20.5 NP_996602 5' arm      3' arm
26796 - 37227 82 23 -20.7 NP_996604 5' arm      3' arm
26804 - 39226 88 20.5 -22.9 5' arm      3' arm
26770 - 29944 90 19.5 -22.4 5' arm      3' arm
26779 - 32654 86 19.5 -26.1 NP_996597 5' arm      3' arm
26777 - 32397 89 24 -24 NP_996597 5' arm      3' arm
26765 - 28025 86 20 -25.4 NP_996591 5' arm      3' arm
26729 - 1050 90 20 -25.3 NP_996565 5' arm      3' arm
26754 - 20061 90 20.5 -22.2 NP_996580 5' arm      3' arm
26766 - 28358 87 21.5 -26.2 NP_996591 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.