miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45686008 NC_005832.1 Ambystoma tigrinum virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
27203 - 65673 88 19 -24 YP_003831 5' arm      3' arm
27164 - 27936 83 19 -25.9 YP_003796 5' arm      3' arm
27137 - 1360 90 19 -20.8 YP_003773 5' arm      3' arm
27022 + 4777 90 19 -20.74 YP_003777 5' arm      3' arm
27064 + 39787 89 19 -27.4 5' arm      3' arm
27175 - 34061 86 19 -24.5 YP_003802 5' arm      3' arm
27227 - 90170 90 19 -23.5 YP_003852 5' arm      3' arm
27099 + 74671 90 19 -28.6 YP_003838 5' arm      3' arm
27184 - 42630 89 19 -23 YP_003815 5' arm      3' arm
27066 + 40862 84 19 -24.4 YP_003814 5' arm      3' arm
27102 + 75995 81 19 -22.1 YP_003839 5' arm      3' arm
27083 + 55051 78 19.5 -19.7 5' arm      3' arm
27105 + 78888 83 19.5 -19.7 YP_003843 5' arm      3' arm
27073 + 46938 90 19.5 -28.1 YP_003817 5' arm      3' arm
27089 + 60301 90 19.5 -22.7 YP_003827 5' arm      3' arm
27115 + 86868 89 19.5 -24.4 YP_003851 5' arm      3' arm
27229 - 91325 90 19.5 -23.8 YP_003852 5' arm      3' arm
27057 + 36019 89 19.5 -19.6 5' arm      3' arm
27026 + 7239 90 19.5 -21.84 YP_003777 5' arm      3' arm
27236 - 98353 85 19.5 -19.6 YP_003857 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.