miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
27137	-	1360	90	19	-20.8	YP_003773		5' arm      3' arm
27219	-	82564	87	19	-22	YP_003844		5' arm      3' arm
27040	+	15599	87	19	-24.5	YP_003784		5' arm      3' arm
27221	-	84645	87	19	-23.1	YP_003848		5' arm      3' arm
27102	+	75995	81	19	-22.1	YP_003839		5' arm      3' arm
27126	+	93900	80	19	-30.2	YP_003854		5' arm      3' arm
27099	+	74671	90	19	-28.6	YP_003838		5' arm      3' arm
27122	+	91900	90	19	-22.2	YP_003852		5' arm      3' arm
27227	-	90170	90	19	-23.5	YP_003852		5' arm      3' arm
27220	-	83424	88	19	-31.1	YP_003845		5' arm      3' arm
27050	+	27344	87	19	-27.8	YP_003796		5' arm      3' arm
27042	+	16843	88	19	-23.4	YP_003785		5' arm      3' arm
27066	+	40862	84	19	-24.4	YP_003814		5' arm      3' arm
27064	+	39787	89	19	-27.4			5' arm      3' arm
27101	+	75804	88	19	-29.9	YP_003839		5' arm      3' arm
27130	+	97106	81	19	-24.2	YP_003856		5' arm      3' arm
27021	+	3180	83	19	-20	YP_003775		5' arm      3' arm
27022	+	4777	90	19	-20.74	YP_003777		5' arm      3' arm
27035	+	12858	89	19	-23.4	YP_003781		5' arm      3' arm
27041	+	15793	89	19	-26.4	YP_003784		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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