miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45686008 NC_005832.1 Ambystoma tigrinum virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
27043 + 17200 90 27 -22.4 YP_003785 5' arm      3' arm
27110 + 82395 88 26 -27.2 YP_003844 5' arm      3' arm
27111 + 82505 90 26 -25.4 YP_003844 5' arm      3' arm
27060 + 37484 90 25.5 -27.8 YP_003809 5' arm      3' arm
27129 + 95675 89 24.5 -23.1 YP_003855 5' arm      3' arm
27234 - 97850 90 24 -25 YP_003856 5' arm      3' arm
27120 + 91648 82 24 -23.1 YP_003852 5' arm      3' arm
27158 - 20308 89 24 -24.5 YP_003788 5' arm      3' arm
27124 + 93039 88 24 -23.9 5' arm      3' arm
27205 - 67432 87 23.5 -26.52 YP_003831 5' arm      3' arm
27212 - 79141 89 23.5 -21.1 YP_003843 5' arm      3' arm
27023 + 5464 89 23.5 -22.5 YP_003777 5' arm      3' arm
27085 + 56525 89 23 -21.1 YP_003824 5' arm      3' arm
27058 + 36538 89 23 -31.1 YP_003806 5' arm      3' arm
27208 - 75662 89 23 -20 YP_003839 5' arm      3' arm
27230 - 92592 90 23 -29.2 YP_003853 5' arm      3' arm
27044 + 17814 90 23 -20.2 YP_003786 5' arm      3' arm
27097 + 72649 89 23 -27 5' arm      3' arm
27045 + 17962 90 23 -26.3 YP_003786 5' arm      3' arm
27134 + 101937 90 23 -24.8 YP_003862 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.