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GenBank Identifier | RefSeq Acc. | Name |
45686008 | NC_005832.1 | Ambystoma tigrinum virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
27043 | + | 17200 | 90 | 27 | -22.4 | YP_003785 | 5' arm 3' arm | ||
27110 | + | 82395 | 88 | 26 | -27.2 | YP_003844 | 5' arm 3' arm | ||
27111 | + | 82505 | 90 | 26 | -25.4 | YP_003844 | 5' arm 3' arm | ||
27060 | + | 37484 | 90 | 25.5 | -27.8 | YP_003809 | 5' arm 3' arm | ||
27129 | + | 95675 | 89 | 24.5 | -23.1 | YP_003855 | 5' arm 3' arm | ||
27234 | - | 97850 | 90 | 24 | -25 | YP_003856 | 5' arm 3' arm | ||
27120 | + | 91648 | 82 | 24 | -23.1 | YP_003852 | 5' arm 3' arm | ||
27158 | - | 20308 | 89 | 24 | -24.5 | YP_003788 | 5' arm 3' arm | ||
27124 | + | 93039 | 88 | 24 | -23.9 | 5' arm 3' arm | |||
27205 | - | 67432 | 87 | 23.5 | -26.52 | YP_003831 | 5' arm 3' arm | ||
27212 | - | 79141 | 89 | 23.5 | -21.1 | YP_003843 | 5' arm 3' arm | ||
27023 | + | 5464 | 89 | 23.5 | -22.5 | YP_003777 | 5' arm 3' arm | ||
27085 | + | 56525 | 89 | 23 | -21.1 | YP_003824 | 5' arm 3' arm | ||
27058 | + | 36538 | 89 | 23 | -31.1 | YP_003806 | 5' arm 3' arm | ||
27208 | - | 75662 | 89 | 23 | -20 | YP_003839 | 5' arm 3' arm | ||
27230 | - | 92592 | 90 | 23 | -29.2 | YP_003853 | 5' arm 3' arm | ||
27044 | + | 17814 | 90 | 23 | -20.2 | YP_003786 | 5' arm 3' arm | ||
27097 | + | 72649 | 89 | 23 | -27 | 5' arm 3' arm | |||
27045 | + | 17962 | 90 | 23 | -26.3 | YP_003786 | 5' arm 3' arm | ||
27134 | + | 101937 | 90 | 23 | -24.8 | YP_003862 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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