miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
48697190 NC_005887.1 Burkholderia cepacia complex phage BcepC6B

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
28002 + 2329 90 19.5 -24.1 YP_024923 5' arm      3' arm
28105 - 2797 90 24 -24.1 5' arm      3' arm
28037 + 21491 90 19.5 -24.1 YP_024939 5' arm      3' arm
28158 - 26036 89 19 -24.1 5' arm      3' arm
28117 - 6618 90 24 -24.1 YP_024928 5' arm      3' arm
28079 + 34282 88 23.5 -24.1 5' arm      3' arm
28172 - 33271 90 20 -24.1 5' arm      3' arm
28099 + 41102 90 20.5 -24 YP_024966 5' arm      3' arm
28085 + 35761 89 21.5 -23.9 YP_024959 5' arm      3' arm
28088 + 36570 88 20 -23.9 YP_024960 5' arm      3' arm
28029 + 17546 88 20.5 -23.9 YP_024937 5' arm      3' arm
28014 + 9602 90 21 -23.8 YP_024932 5' arm      3' arm
28005 + 3951 85 22 -23.8 YP_024925 5' arm      3' arm
28131 - 13583 89 19.5 -23.8 YP_024935 5' arm      3' arm
28044 + 23841 81 22 -23.8 5' arm      3' arm
28108 - 3956 88 20.5 -23.8 YP_024925 5' arm      3' arm
28040 + 22226 89 21 -23.8 YP_024940 5' arm      3' arm
28096 + 40115 90 23 -23.7 YP_024966 5' arm      3' arm
28145 - 18959 90 24.5 -23.7 YP_024937 5' arm      3' arm
28020 + 13833 90 19 -23.7 YP_024935 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.