miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
48697190 NC_005887.1 Burkholderia cepacia complex phage BcepC6B

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
28042 + 22566 87 21 -25.1 YP_024941 5' arm      3' arm
28043 + 22714 89 21 -21.4 YP_024942 5' arm      3' arm
28033 + 18980 90 20.5 -28.4 5' arm      3' arm
28039 + 22115 84 20.5 -31.4 YP_024940 5' arm      3' arm
28037 + 21491 90 19.5 -24.1 YP_024939 5' arm      3' arm
28038 + 21964 86 19 -21.8 YP_024939 5' arm      3' arm
28050 + 26346 89 24.5 -27.7 YP_024948 5' arm      3' arm
28036 + 21032 90 23 -23.3 YP_024939 5' arm      3' arm
28041 + 22467 89 23.5 -20.1 YP_024941 5' arm      3' arm
28032 + 18146 88 19 -26 YP_024937 5' arm      3' arm
28027 + 16288 89 21.5 -21.9 YP_024936 5' arm      3' arm
28028 + 17001 84 21 -26.7 YP_024937 5' arm      3' arm
28021 + 13977 90 20.5 -25.6 YP_024935 5' arm      3' arm
28029 + 17546 88 20.5 -23.9 YP_024937 5' arm      3' arm
28024 + 14329 87 20 -25.6 YP_024936 5' arm      3' arm
28025 + 15233 77 20 -25.5 YP_024936 5' arm      3' arm
28031 + 17959 90 19.5 -21 YP_024937 5' arm      3' arm
28022 + 14134 89 19 -29.8 YP_024936 5' arm      3' arm
28026 + 15399 88 19 -19.6 YP_024936 5' arm      3' arm
28044 + 23841 81 22 -23.8 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.