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| GenBank Identifier | RefSeq Acc. | Name |
| 72257064 | NC_005886.2 | Burkholderia cenocepacia phage BcepB1A |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 27990 | - | 40612 | 90 | 20.5 | -21 | YP_291195 | 5' arm 3' arm | ||
| 27989 | - | 37114 | 89 | 19 | -21 | YP_291192 | 5' arm 3' arm | ||
| 27944 | + | 33975 | 84 | 22 | -29.6 | YP_291186 | 5' arm 3' arm | ||
| 27980 | - | 26635 | 87 | 20.5 | -20.1 | YP_291180 | 5' arm 3' arm | ||
| 27936 | + | 22526 | 81 | 22.5 | -23.02 | YP_291177 | 5' arm 3' arm | ||
| 27995 | - | 46916 | 90 | 19.5 | -24.7 | YP_024920 | 5' arm 3' arm | ||
| 27922 | + | 7565 | 88 | 25 | -19.7 | YP_024917 | 5' arm 3' arm | ||
| 27961 | - | 7540 | 89 | 22.5 | -24.9 | YP_024917 | 5' arm 3' arm | ||
| 27960 | - | 7118 | 89 | 22 | -22 | YP_024916 | 5' arm 3' arm | ||
| 27959 | - | 6086 | 87 | 22.5 | -20.7 | YP_024914 | 5' arm 3' arm | ||
| 27921 | + | 6031 | 89 | 19.5 | -24.1 | YP_024914 | 5' arm 3' arm | ||
| 27958 | - | 5364 | 87 | 24.5 | -23.6 | YP_024914 | 5' arm 3' arm | ||
| 27957 | - | 3688 | 88 | 21.5 | -27.3 | YP_024912 | 5' arm 3' arm | ||
| 27920 | + | 1968 | 80 | 19.5 | -27.6 | YP_024911 | 5' arm 3' arm | ||
| 27956 | - | 1537 | 89 | 19 | -23.4 | YP_024910 | 5' arm 3' arm | ||
| 27955 | + | 44960 | 87 | 20 | -22.9 | YP_024903 | 5' arm 3' arm | ||
| 27951 | + | 43519 | 86 | 24 | -22.9 | YP_024902 | 5' arm 3' arm | ||
| 27953 | + | 43942 | 87 | 20.5 | -28.4 | YP_024902 | 5' arm 3' arm | ||
| 27952 | + | 43800 | 89 | 20 | -21 | YP_024902 | 5' arm 3' arm | ||
| 27954 | + | 44069 | 87 | 22.5 | -21.6 | YP_024902 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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