miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
56692908 NC_006552.1 Pseudomonas aeruginosa phage F116

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
30837 - 20101 90 22 -20 YP_164296 5' arm      3' arm
30696 + 4383 75 19 -20 YP_164271 5' arm      3' arm
30925 - 55082 89 22 -20.1 YP_164324 5' arm      3' arm
30895 - 44599 89 20 -20.1 YP_164321 5' arm      3' arm
30691 + 2684 89 20 -20.1 YP_164269 5' arm      3' arm
30685 + 1067 87 19 -20.1 YP_164266 5' arm      3' arm
30905 - 49322 87 21 -20.2 YP_164323 5' arm      3' arm
30786 + 45538 89 20 -20.2 YP_164321 5' arm      3' arm
30884 - 39589 89 20.5 -20.2 YP_164317 5' arm      3' arm
30859 - 30096 88 23.5 -20.2 YP_164307 5' arm      3' arm
30746 + 23093 89 21 -20.3 YP_164302 5' arm      3' arm
30849 - 25356 88 21.5 -20.3 YP_164304 5' arm      3' arm
30736 + 19213 85 19.5 -20.4 5' arm      3' arm
30834 - 19436 90 21.5 -20.4 5' arm      3' arm
30700 + 5835 90 21 -20.4 YP_164274 5' arm      3' arm
30708 + 7426 90 21 -20.5 YP_164274 5' arm      3' arm
30840 - 21664 89 19 -20.6 YP_164299 5' arm      3' arm
30888 - 41898 89 22 -20.6 YP_164318 5' arm      3' arm
30720 + 11582 89 20.5 -20.6 YP_164280 5' arm      3' arm
30692 + 2813 90 19 -20.6 YP_164269 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.