miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
56160529 AC_000008.1 Human adenovirus type 5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
215 + 351 90 22 -25.5 5' arm      3' arm
216 + 4526 90 25 -29.9 AP_000201 5' arm      3' arm
217 + 4627 83 19.5 -20.7 AP_000201 5' arm      3' arm
218 + 5302 88 25.5 -25.9 AP_000201 5' arm      3' arm
219 + 5477 89 19.5 -20.1 AP_000202 5' arm      3' arm
220 + 5997 88 23 -25.5 AP_000202 5' arm      3' arm
221 + 6607 86 22.5 -28.2 AP_000202 5' arm      3' arm
222 + 8344 90 20 -28.2 AP_000202 5' arm      3' arm
223 + 8668 90 22.5 -21.6 AP_000203 5' arm      3' arm
224 + 9487 90 20 -25.1 AP_000203 5' arm      3' arm
225 + 9725 88 22 -25 AP_000203 5' arm      3' arm
226 + 10079 75 21 -25.3 AP_000203 5' arm      3' arm
227 + 10432 90 21 -24 AP_000203 5' arm      3' arm
228 + 10793 90 23 -22.6 5' arm      3' arm
229 + 10883 89 21.5 -21.9 5' arm      3' arm
230 + 16317 88 23 -23.9 AP_000207 5' arm      3' arm
231 + 17122 86 20 -21.1 AP_000208 5' arm      3' arm
232 + 17300 85 20 -20.8 AP_000208 5' arm      3' arm
233 + 20345 87 26 -29.9 AP_000211 5' arm      3' arm
234 + 23232 79 19 -25.8 AP_000213 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.