miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
56160529 AC_000008.1 Human adenovirus type 5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
254 - 15301 89 20 -26 AP_000206 5' arm      3' arm
218 + 5302 88 25.5 -25.9 AP_000201 5' arm      3' arm
234 + 23232 79 19 -25.8 AP_000213 5' arm      3' arm
244 - 9105 86 20.5 -25.6 AP_000203 5' arm      3' arm
220 + 5997 88 23 -25.5 AP_000202 5' arm      3' arm
215 + 351 90 22 -25.5 5' arm      3' arm
226 + 10079 75 21 -25.3 AP_000203 5' arm      3' arm
252 - 13655 89 19 -25.1 AP_000205 5' arm      3' arm
224 + 9487 90 20 -25.1 AP_000203 5' arm      3' arm
240 - 5217 89 20 -25.1 AP_000201 5' arm      3' arm
225 + 9725 88 22 -25 AP_000203 5' arm      3' arm
253 - 13950 90 21 -24.9 AP_000205 5' arm      3' arm
248 - 11556 88 19.5 -24.6 AP_000204 5' arm      3' arm
269 - 26765 90 24.5 -24.4 AP_000216 5' arm      3' arm
227 + 10432 90 21 -24 AP_000203 5' arm      3' arm
257 - 16806 90 20 -24 AP_000208 5' arm      3' arm
230 + 16317 88 23 -23.9 AP_000207 5' arm      3' arm
260 - 18503 88 23.5 -23.8 AP_000210 5' arm      3' arm
249 - 12470 90 20.5 -23.6 AP_000205 5' arm      3' arm
265 - 21711 90 21.5 -23.02 AP_000211 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.