miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
227	+	10432	90	21	-24	AP_000203		5' arm      3' arm
224	+	9487	90	20	-25.1	AP_000203		5' arm      3' arm
225	+	9725	88	22	-25	AP_000203		5' arm      3' arm
247	-	11163	90	23	-28.9	AP_000204		5' arm      3' arm
248	-	11556	88	19.5	-24.6	AP_000204		5' arm      3' arm
249	-	12470	90	20.5	-23.6	AP_000205		5' arm      3' arm
252	-	13655	89	19	-25.1	AP_000205		5' arm      3' arm
253	-	13950	90	21	-24.9	AP_000205		5' arm      3' arm
250	-	12666	89	23	-29.7	AP_000205		5' arm      3' arm
251	-	13118	90	20.5	-27.2	AP_000205		5' arm      3' arm
255	-	15529	89	20	-22.6	AP_000206		5' arm      3' arm
254	-	15301	89	20	-26	AP_000206		5' arm      3' arm
230	+	16317	88	23	-23.9	AP_000207		5' arm      3' arm
256	-	16239	89	22	-28.7	AP_000207		5' arm      3' arm
258	-	17271	90	24.5	-20.5	AP_000208		5' arm      3' arm
231	+	17122	86	20	-21.1	AP_000208		5' arm      3' arm
257	-	16806	90	20	-24	AP_000208		5' arm      3' arm
232	+	17300	85	20	-20.8	AP_000208		5' arm      3' arm
261	-	18598	89	20	-20.4	AP_000210		5' arm      3' arm
259	-	18402	90	19	-32.4	AP_000210		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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