miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9630386 NC_001900.1 Mycobacteriophage D29

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
7251 + 48862 88 28 -30.6 5' arm      3' arm
7252 + 48978 90 23 -32.1 5' arm      3' arm
7216 + 32796 90 20.5 -20.8 5' arm      3' arm
7326 - 26894 90 21 -35.3 5' arm      3' arm
7250 + 48414 89 22.5 -20.7 5' arm      3' arm
7368 - 49051 90 19 -22.4 5' arm      3' arm
7240 + 44820 88 19 -21.8 5' arm      3' arm
7192 + 21614 83 20 -23.5 5' arm      3' arm
7249 + 48295 89 22.5 -21.1 5' arm      3' arm
7254 - 375 82 21.5 -32 5' arm      3' arm
7253 - 146 89 20.5 -24.9 5' arm      3' arm
7165 + 4449 89 22 -23.5 5' arm      3' arm
7309 - 19729 88 20 -23.6 5' arm      3' arm
7357 - 41484 85 22 -22.1 5' arm      3' arm
7313 - 22351 87 20 -21.3 5' arm      3' arm
7263 - 2707 90 19 -28.1 5' arm      3' arm
7257 - 1019 89 20 -25.3 NP_046819 5' arm      3' arm
7255 - 596 90 21 -25.9 NP_046819 5' arm      3' arm
7256 - 703 86 19 -21.6 NP_046819 5' arm      3' arm
7258 - 1596 87 22.5 -36.5 NP_046820 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.