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GenBank Identifier | RefSeq Acc. | Name |
9630386 | NC_001900.1 | Mycobacteriophage D29 |
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ID | strand | start position | length | sRNA loop score |
core MFE.![]() |
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
7258 | - | 1596 | 87 | 22.5 | -36.5 | NP_046820 | 5' arm 3' arm | ||
7326 | - | 26894 | 90 | 21 | -35.3 | 5' arm 3' arm | |||
7168 | + | 7358 | 87 | 20.5 | -34.1 | NP_046828 | 5' arm 3' arm | ||
7320 | - | 23920 | 90 | 19 | -33.6 | NP_046847 | 5' arm 3' arm | ||
7161 | + | 2176 | 87 | 21.5 | -32.4 | NP_046821 | 5' arm 3' arm | ||
7252 | + | 48978 | 90 | 23 | -32.1 | 5' arm 3' arm | |||
7254 | - | 375 | 82 | 21.5 | -32 | 5' arm 3' arm | |||
7162 | + | 2366 | 90 | 22.5 | -31.9 | NP_046822 | 5' arm 3' arm | ||
7177 | + | 12235 | 88 | 19 | -31.2 | NP_046832 | 5' arm 3' arm | ||
7172 | + | 9343 | 87 | 21 | -31.1 | NP_046829 | 5' arm 3' arm | ||
7311 | - | 20820 | 84 | 22.5 | -31.1 | NP_046844 | 5' arm 3' arm | ||
7218 | + | 33674 | 85 | 22.5 | -30.9 | NP_046865 | 5' arm 3' arm | ||
7251 | + | 48862 | 88 | 28 | -30.6 | 5' arm 3' arm | |||
7352 | - | 39026 | 88 | 19 | -30.5 | NP_046874 | 5' arm 3' arm | ||
7281 | - | 8232 | 86 | 24 | -30.3 | NP_046828 | 5' arm 3' arm | ||
7330 | - | 28904 | 89 | 22 | -30.3 | NP_046857 | 5' arm 3' arm | ||
7316 | - | 22975 | 90 | 20 | -30.1 | NP_046847 | 5' arm 3' arm | ||
7265 | - | 3014 | 89 | 22.5 | -29.71 | NP_046823 | 5' arm 3' arm | ||
7342 | - | 34783 | 89 | 22.5 | -29.5 | NP_046865 | 5' arm 3' arm | ||
7230 | + | 41129 | 88 | 20.5 | -29.4 | NP_046880 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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