miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
22788711 NC_004156.1 Heliothis zea virus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
16664 - 41446 87 22.5 -22.7 NP_690450 5' arm      3' arm
16675 - 90349 90 21 -20.53 NP_690481 5' arm      3' arm
16676 - 96293 89 21.5 -22 NP_690486 5' arm      3' arm
16656 + 201860 86 20.5 -24.1 5' arm      3' arm
16632 + 40560 89 21.5 -20.1 NP_690450 5' arm      3' arm
16629 + 39304 89 22.5 -25.4 NP_690450 5' arm      3' arm
16628 + 35467 78 21.5 -22.5 NP_690447 5' arm      3' arm
16636 + 62672 86 21.5 -21.46 NP_690465 5' arm      3' arm
16637 + 67380 90 24 -22.4 NP_690469 5' arm      3' arm
16638 + 75421 85 20.5 -22.5 NP_690473 5' arm      3' arm
16654 + 175542 84 25.5 -22.5 NP_690538 5' arm      3' arm
16653 + 170034 90 21 -30 NP_690534 5' arm      3' arm
16652 + 146304 89 23 -26.3 NP_690519 5' arm      3' arm
16651 + 143798 87 19.5 -21 NP_690517 5' arm      3' arm
16650 + 123043 89 24 -24.7 NP_690502 5' arm      3' arm
16647 + 109996 86 21 -24 NP_690494 5' arm      3' arm
16649 + 122878 85 29.5 -27.3 NP_690502 5' arm      3' arm
16648 + 112029 90 24.5 -21.7 NP_690494 5' arm      3' arm
16639 + 78886 90 19.5 -22.1 NP_690476 5' arm      3' arm
16640 + 81086 89 21 -20 NP_690477 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.