miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
8849	+	34792	89	22.5	-22.6	NP_061546		5' arm      3' arm
8913	-	34922	90	23	-29.2	NP_061546		5' arm      3' arm
8850	+	34898	86	24	-20.2	NP_061546		5' arm      3' arm
8912	-	34027	89	19	-23.2	NP_061542		5' arm      3' arm
8848	+	34039	88	22	-26.3	NP_061542		5' arm      3' arm
8847	+	33367	89	23	-29.9	NP_061540		5' arm      3' arm
8845	+	32555	87	22	-26	NP_061540		5' arm      3' arm
8846	+	32815	89	19.5	-22.9	NP_061540		5' arm      3' arm
8843	+	32169	90	19	-19.6	NP_061539		5' arm      3' arm
8911	-	32398	87	19	-25.9	NP_061539		5' arm
8842	+	31426	89	19	-21.4	NP_061538		5' arm      3' arm
8838	+	29444	87	22	-20	NP_061536		5' arm      3' arm
8839	+	29718	90	20	-24.4	NP_061536		5' arm      3' arm
8856	+	38980	90	21.5	-23.9	NP_061536		5' arm      3' arm
8910	-	29072	88	20.5	-21.2	NP_061535		5' arm      3' arm
8837	+	28813	89	20.5	-22.9	NP_061534		5' arm      3' arm
8909	-	28733	88	20	-23.5	NP_061533		5' arm      3' arm
8833	+	27623	87	19.5	-23.4	NP_061531		5' arm      3' arm
8834	+	27808	85	21	-27.6	NP_061531		5' arm      3' arm
8835	+	27953	87	24	-29.4	NP_061531		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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