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| GenBank Identifier | RefSeq Acc. | Name |
| 68304136 | NC_007151.1 | Chrysodeixis chalcites nucleopolyhedrovirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 32593 | - | 140582 | 90 | 24 | -32.1 | 5' arm 3' arm | |||
| 32572 | + | 65674 | 87 | 22.5 | -28.5 | YP_249672 | 5' arm 3' arm | ||
| 32592 | - | 136301 | 90 | 19 | -28 | YP_249745 | 5' arm 3' arm | ||
| 32578 | + | 118809 | 90 | 21.5 | -27.6 | YP_249725 | 5' arm 3' arm | ||
| 32569 | + | 31691 | 87 | 21.5 | -27.3 | YP_249637 | 5' arm 3' arm | ||
| 32590 | - | 109700 | 89 | 29 | -27.3 | YP_249714 | 5' arm 3' arm | ||
| 32568 | + | 27370 | 89 | 29 | -27.1 | YP_249632 | 5' arm 3' arm | ||
| 32579 | + | 118916 | 88 | 21 | -26 | YP_249697 | 5' arm 3' arm | ||
| 32582 | + | 130254 | 87 | 21.5 | -25.5 | YP_249738 | 5' arm 3' arm | ||
| 32567 | + | 26525 | 90 | 28 | -24.3 | YP_249629 | 5' arm 3' arm | ||
| 32577 | + | 114801 | 88 | 20 | -24 | 5' arm 3' arm | |||
| 32571 | + | 61026 | 90 | 25.5 | -23.4 | YP_249668 | 5' arm 3' arm | ||
| 32589 | - | 67506 | 89 | 22 | -23.1 | YP_249673 | 5' arm 3' arm | ||
| 32565 | + | 256 | 88 | 21 | -22.3 | YP_249605 | 5' arm 3' arm | ||
| 32584 | + | 136732 | 88 | 23.5 | -21.9 | 5' arm 3' arm | |||
| 32594 | - | 147301 | 84 | 19.5 | -21.9 | YP_249755 | 5' arm 3' arm | ||
| 32573 | + | 78210 | 87 | 21 | -21.8 | YP_249685 | 5' arm 3' arm | ||
| 32585 | + | 140527 | 87 | 20.5 | -21.7 | 5' arm 3' arm | |||
| 32566 | + | 4625 | 87 | 20.5 | -21.6 | YP_249608 | 5' arm 3' arm | ||
| 32575 | + | 105870 | 88 | 22.5 | -21.4 | YP_249711 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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