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GenBank Identifier | RefSeq Acc. | Name |
68304136 | NC_007151.1 | Chrysodeixis chalcites nucleopolyhedrovirus |
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ID | strand | start position | length | sRNA loop score |
core MFE.![]() |
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
32593 | - | 140582 | 90 | 24 | -32.1 | 5' arm 3' arm | |||
32572 | + | 65674 | 87 | 22.5 | -28.5 | YP_249672 | 5' arm 3' arm | ||
32592 | - | 136301 | 90 | 19 | -28 | YP_249745 | 5' arm 3' arm | ||
32578 | + | 118809 | 90 | 21.5 | -27.6 | YP_249725 | 5' arm 3' arm | ||
32569 | + | 31691 | 87 | 21.5 | -27.3 | YP_249637 | 5' arm 3' arm | ||
32590 | - | 109700 | 89 | 29 | -27.3 | YP_249714 | 5' arm 3' arm | ||
32568 | + | 27370 | 89 | 29 | -27.1 | YP_249632 | 5' arm 3' arm | ||
32579 | + | 118916 | 88 | 21 | -26 | YP_249697 | 5' arm 3' arm | ||
32582 | + | 130254 | 87 | 21.5 | -25.5 | YP_249738 | 5' arm 3' arm | ||
32567 | + | 26525 | 90 | 28 | -24.3 | YP_249629 | 5' arm 3' arm | ||
32577 | + | 114801 | 88 | 20 | -24 | 5' arm 3' arm | |||
32571 | + | 61026 | 90 | 25.5 | -23.4 | YP_249668 | 5' arm 3' arm | ||
32589 | - | 67506 | 89 | 22 | -23.1 | YP_249673 | 5' arm 3' arm | ||
32565 | + | 256 | 88 | 21 | -22.3 | YP_249605 | 5' arm 3' arm | ||
32584 | + | 136732 | 88 | 23.5 | -21.9 | 5' arm 3' arm | |||
32594 | - | 147301 | 84 | 19.5 | -21.9 | YP_249755 | 5' arm 3' arm | ||
32573 | + | 78210 | 87 | 21 | -21.8 | YP_249685 | 5' arm 3' arm | ||
32585 | + | 140527 | 87 | 20.5 | -21.7 | 5' arm 3' arm | |||
32566 | + | 4625 | 87 | 20.5 | -21.6 | YP_249608 | 5' arm 3' arm | ||
32575 | + | 105870 | 88 | 22.5 | -21.4 | YP_249711 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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