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GenBank Identifier | RefSeq Acc. | Name |
66392052 | NC_007024.1 | Xanthomonas campestris pv. pelargonii phage Xp15 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
32362 | - | 54866 | 90 | 23 | -30.1 | YP_239350 | 5' arm 3' arm | ||
32361 | - | 52419 | 89 | 21 | -20.4 | YP_239344 | 3' arm | ||
32360 | - | 51382 | 85 | 22 | -23.5 | YP_239339 | 5' arm 3' arm | ||
32359 | - | 51095 | 89 | 19 | -19.7 | YP_239338 | 5' arm 3' arm | ||
32358 | - | 47342 | 85 | 20.5 | -28.9 | YP_239326 | 5' arm 3' arm | ||
32330 | + | 47258 | 85 | 23.5 | -22.8 | YP_239326 | 5' arm 3' arm | ||
32357 | - | 46415 | 89 | 20 | -19.7 | YP_239324 | 5' arm 3' arm | ||
32329 | + | 46327 | 87 | 22 | -22.1 | YP_239324 | 5' arm 3' arm | ||
32356 | - | 43680 | 88 | 21.5 | -20.7 | YP_239317 | 3' arm | ||
32326 | + | 42621 | 90 | 22.5 | -22.4 | YP_239316 | 5' arm 3' arm | ||
32327 | + | 43035 | 90 | 20 | -25.9 | YP_239316 | 5' arm 3' arm | ||
32325 | + | 40375 | 90 | 23 | -21.5 | YP_239315 | 5' arm 3' arm | ||
32354 | - | 40728 | 87 | 22 | -32.6 | YP_239315 | 5' arm 3' arm | ||
32353 | - | 40176 | 86 | 22.5 | -29.1 | YP_239314 | 5' arm 3' arm | ||
32352 | - | 35586 | 89 | 23.5 | -23.9 | YP_239310 | |||
32321 | + | 33927 | 86 | 22.5 | -26.5 | YP_239308 | 5' arm 3' arm | ||
32322 | + | 34244 | 89 | 19.5 | -21 | YP_239308 | 5' arm 3' arm | ||
32320 | + | 33405 | 90 | 19.5 | -30.1 | YP_239307 | 5' arm 3' arm | ||
32319 | + | 30925 | 79 | 23.5 | -25.7 | YP_239305 | 5' arm 3' arm | ||
32349 | - | 28921 | 90 | 22.5 | -24.6 | YP_239301 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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