miRNA display CGI


Results 1 - 20 of 68 are showing below:
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GenBank Identifier RefSeq Acc. Name
66392052 NC_007024.1 Xanthomonas campestris pv. pelargonii phage Xp15

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
32331 + 55196 84 19.5 -20.4 5' arm      3' arm
32337 - 8234 88 19.5 -23.7 5' arm      
32355 - 43369 89 21 -31.7 5' arm      3' arm
32350 - 31456 86 19.5 -25.4 5' arm      3' arm
32351 - 35061 90 22 -36.42 5' arm      3' arm
32348 - 26404 90 19.5 -27 5' arm      3' arm
32323 + 34974 89 24.5 -34.7 5' arm      3' arm
32324 + 37320 89 25.5 -31.7 5' arm      3' arm
32328 + 43281 89 21 -28.4 5' arm      3' arm
32306 + 12805 89 20.5 -28.9 5' arm      3' arm
32296 + 1448 89 20.5 -26.6 5' arm      3' arm
32301 + 8166 88 19.5 -25.4 5' arm      3' arm
32297 + 2107 89 19 -23.2 5' arm      3' arm
32295 + 260 90 22 -25.8 YP_239269 5' arm      3' arm
32332 - 2353 90 20 -23.3 YP_239272 5' arm      3' arm
32334 - 3085 89 19.5 -20 YP_239272 5' arm      3' arm
32333 - 2603 88 20.5 -19.7 YP_239272 5' arm      
32335 - 3259 90 22 -21.4 YP_239272 5' arm      3' arm
32298 + 3855 90 20.5 -24.2 YP_239273 5' arm      3' arm
32336 - 3938 77 21 -24 YP_239273 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.