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GenBank Identifier | RefSeq Acc. | Name |
9629553 | NC_001826.1 | Murid herpesvirus 4 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
6101 | + | 550 | 89 | 20.5 | -37.5 | mghv-mir-M1-2 | 3' arm | ||
6102 | + | 1649 | 82 | 22.5 | -24.3 | 5' arm 3' arm | |||
6103 | + | 2374 | 86 | 20 | -24.5 | NP_044841 | 5' arm 3' arm | ||
6104 | + | 3454 | 89 | 20 | -19.7 | 5' arm 3' arm | |||
6105 | + | 3733 | 89 | 24 | -19.6 | 5' arm 3' arm | |||
6106 | + | 5217 | 89 | 19.5 | -25.06 | 5' arm 3' arm | |||
6107 | + | 6325 | 85 | 22.5 | -21.4 | NP_044843 | 5' arm 3' arm | ||
6108 | + | 8524 | 90 | 22.5 | -26.5 | NP_044844 | 5' arm 3' arm | ||
6109 | + | 13171 | 83 | 20 | -25 | NP_044846 | 5' arm 3' arm | ||
6110 | + | 13767 | 89 | 19 | -25.9 | NP_044846 | 5' arm 3' arm | ||
6111 | + | 25641 | 90 | 19.5 | -24.8 | 5' arm 3' arm | |||
6112 | + | 28931 | 88 | 20 | -22.2 | NP_044855 | 5' arm 3' arm | ||
6113 | + | 29030 | 90 | 20 | -22.4 | NP_044855 | 5' arm 3' arm | ||
6114 | + | 29902 | 89 | 21 | -21.8 | NP_044856 | 5' arm 3' arm | ||
6115 | + | 31959 | 83 | 19.5 | -25.5 | NP_044857 | 5' arm 3' arm | ||
6116 | + | 32453 | 89 | 20 | -24.5 | NP_044858 | 5' arm 3' arm | ||
6117 | + | 50200 | 87 | 24 | -20.7 | NP_044870 | 5' arm 3' arm | ||
6118 | + | 74301 | 86 | 20.5 | -20.5 | NP_044893 | 5' arm 3' arm | ||
6119 | + | 78962 | 90 | 21.5 | -22 | NP_044897 | 5' arm 3' arm | ||
6120 | + | 82107 | 77 | 19.5 | -19.4 | NP_044899 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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