miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629553 NC_001826.1 Murid herpesvirus 4

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6129 - 26133 87 25 -30.5 5' arm      3' arm
6138 - 70803 87 24.5 -20.2 NP_044888 5' arm      3' arm
6105 + 3733 89 24 -19.6 5' arm      3' arm
6117 + 50200 87 24 -20.7 NP_044870 5' arm      3' arm
6122 + 107597 86 24 -21.7 NP_044915 5' arm      3' arm
6136 - 69778 78 23 -27.7 NP_044888 5' arm      3' arm
6145 - 102104 89 23 -20.3 5' arm      3' arm
6130 - 26462 89 23 -21.64 NP_044853 5' arm      3' arm
6142 - 93668 88 23 -21.8 NP_044902 5' arm      3' arm
6102 + 1649 82 22.5 -24.3 5' arm      3' arm
6107 + 6325 85 22.5 -21.4 NP_044843 5' arm      3' arm
6143 - 94228 89 22.5 -19.7 NP_044903 5' arm      3' arm
6121 + 104676 90 22.5 -25.7 NP_044913 5' arm      3' arm
6149 - 119369 89 22.5 -23.7 5' arm      3' arm
6108 + 8524 90 22.5 -26.5 NP_044844 5' arm      3' arm
6119 + 78962 90 21.5 -22 NP_044897 5' arm      3' arm
6114 + 29902 89 21 -21.8 NP_044856 5' arm      3' arm
6141 - 87648 89 21 -21.7 NP_044902 5' arm      3' arm
6123 - 2091 90 21 -25.1 NP_044841 5' arm      3' arm
6101 + 550 89 20.5 -37.5 mghv-mir-M1-2       3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.