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GenBank Identifier | RefSeq Acc. | Name |
9629553 | NC_001826.1 | Murid herpesvirus 4 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
6129 | - | 26133 | 87 | 25 | -30.5 | 5' arm 3' arm | |||
6138 | - | 70803 | 87 | 24.5 | -20.2 | NP_044888 | 5' arm 3' arm | ||
6105 | + | 3733 | 89 | 24 | -19.6 | 5' arm 3' arm | |||
6117 | + | 50200 | 87 | 24 | -20.7 | NP_044870 | 5' arm 3' arm | ||
6122 | + | 107597 | 86 | 24 | -21.7 | NP_044915 | 5' arm 3' arm | ||
6136 | - | 69778 | 78 | 23 | -27.7 | NP_044888 | 5' arm 3' arm | ||
6145 | - | 102104 | 89 | 23 | -20.3 | 5' arm 3' arm | |||
6130 | - | 26462 | 89 | 23 | -21.64 | NP_044853 | 5' arm 3' arm | ||
6142 | - | 93668 | 88 | 23 | -21.8 | NP_044902 | 5' arm 3' arm | ||
6102 | + | 1649 | 82 | 22.5 | -24.3 | 5' arm 3' arm | |||
6107 | + | 6325 | 85 | 22.5 | -21.4 | NP_044843 | 5' arm 3' arm | ||
6143 | - | 94228 | 89 | 22.5 | -19.7 | NP_044903 | 5' arm 3' arm | ||
6121 | + | 104676 | 90 | 22.5 | -25.7 | NP_044913 | 5' arm 3' arm | ||
6149 | - | 119369 | 89 | 22.5 | -23.7 | 5' arm 3' arm | |||
6108 | + | 8524 | 90 | 22.5 | -26.5 | NP_044844 | 5' arm 3' arm | ||
6119 | + | 78962 | 90 | 21.5 | -22 | NP_044897 | 5' arm 3' arm | ||
6114 | + | 29902 | 89 | 21 | -21.8 | NP_044856 | 5' arm 3' arm | ||
6141 | - | 87648 | 89 | 21 | -21.7 | NP_044902 | 5' arm 3' arm | ||
6123 | - | 2091 | 90 | 21 | -25.1 | NP_044841 | 5' arm 3' arm | ||
6101 | + | 550 | 89 | 20.5 | -37.5 | mghv-mir-M1-2 | 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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