miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
12626	-	38675	90	21	-21	NP_542563		5' arm      3' arm
12625	-	37356	88	23	-23.2			5' arm      3' arm
12624	-	36367	90	20.5	-24.6	NP_542558		5' arm      3' arm
12623	-	35907	89	22.5	-19.7	NP_542557		5' arm      3' arm
12622	-	35560	90	23	-21.8	NP_542557		5' arm      3' arm
12621	-	34935	90	19.5	-21.7	NP_542556		5' arm      3' arm
12620	-	32751	90	20.5	-22.5	NP_542554		5' arm      3' arm
12619	-	32617	86	24.5	-19.5	NP_542554		5' arm      3' arm
12618	-	32351	89	19.5	-20.4	NP_542554		5' arm      3' arm
12617	-	31237	90	21	-22.3			5' arm      3' arm
12616	-	31063	79	19.5	-23.8	NP_542551		5' arm      3' arm
12615	-	29050	90	22	-20.2	NP_542546		5' arm      3' arm
12614	-	28799	89	23	-27.4	NP_542546		5' arm      3' arm
12613	-	28422	86	21	-24.6	NP_542546		5' arm      3' arm
12612	-	26714	90	19.5	-20.7	NP_542539		5' arm      3' arm
12611	-	26005	89	21.5	-22.7	NP_542538		5' arm      3' arm
12610	-	25448	90	19	-20.5	NP_542538		5' arm      3' arm
12609	-	24642	90	19.5	-24.5	NP_542537		5' arm      3' arm
12608	-	24456	90	21	-28.4	NP_542537		5' arm      3' arm
12607	-	23835	89	20.5	-20	NP_542536		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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