miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
77864625 NC_007497.1 Burkholderia cepacia phage Bcep176

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
33178 - 44033 90 23 -22.4 YP_355415 5' arm      3' arm
33177 - 42272 90 19.5 -20 YP_355414 5' arm      3' arm
33176 - 41720 89 24.5 -22.9 YP_355414 5' arm      3' arm
33175 - 41007 87 20 -21.5 YP_355413 5' arm      3' arm
33174 - 40882 89 20 -24.3 YP_355413 5' arm      3' arm
33173 - 39197 90 24 -25.3 5' arm      3' arm
33172 - 38560 89 23.5 -25.3 YP_355409 5' arm      3' arm
33171 - 37974 89 21 -19.5 YP_355408 5' arm      3' arm
33170 - 37789 89 21 -23.3 YP_355407 5' arm      3' arm
33169 - 36739 89 22.5 -25.6 YP_355405 5' arm      3' arm
33168 - 36406 86 21.5 -27 YP_355404 5' arm      3' arm
33167 - 36173 84 24.5 -28 YP_355403 5' arm      3' arm
33166 - 36083 88 19 -25.3 YP_355403 5' arm      3' arm
33165 - 35695 84 21.5 -32.3 YP_355403 5' arm      3' arm
33164 - 35534 90 20.5 -23.1 YP_355403 5' arm      3' arm
33163 - 35339 80 21 -23.04 YP_355403 5' arm      3' arm
33162 - 34854 90 19.5 -22.1 YP_355403 5' arm      3' arm
33161 - 34214 85 19.5 -29.5 YP_355403 5' arm      3' arm
33160 - 32921 88 21.5 -25.3 YP_355403 5' arm      3' arm
33159 - 32717 90 23.5 -25.7 YP_355403 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.