miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38639896 NC_005261.1 Bovine herpesvirus 5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23857 - 131804 88 23.5 -21.4 5' arm      3' arm
23856 - 131049 88 21.5 -29.8 5' arm      3' arm
23855 - 129798 86 22.5 -22.1 5' arm      3' arm
23854 - 129683 86 22 -21 5' arm      3' arm
23853 - 128030 86 23 -28 NP_954963 5' arm      3' arm
23852 - 127576 90 22 -37.3 NP_954963 5' arm      3' arm
23851 - 127128 90 22 -24.4 5' arm      3' arm
23850 - 125953 84 21.5 -21.9 NP_954962 5' arm      3' arm
23849 - 125603 90 21.5 -26.2 NP_954961 5' arm      3' arm
23848 - 124952 90 20 -21.5 NP_954961 5' arm      3' arm
23847 - 123716 90 23 -22.4 NP_954960 5' arm      3' arm
23846 - 123579 89 20 -27 NP_954960 5' arm      3' arm
23845 - 121554 88 20.5 -26.1 NP_954959 5' arm      3' arm
23844 - 120860 80 23.5 -29.4 NP_954958 5' arm      3' arm
23843 - 120479 90 19 -22.9 NP_954958 5' arm      3' arm
23842 - 120215 89 20 -25.8 NP_954958 5' arm      3' arm
23841 - 120090 88 20.5 -20.8 NP_954958 5' arm      3' arm
23840 - 119566 89 22.5 -24.7 5' arm      3' arm
23839 - 119108 90 19.5 -24.11 NP_954957 5' arm      3' arm
23838 - 118719 90 20.5 -20.8 NP_954957 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.