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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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ID
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strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23797 | - | 82659 | 87 | 20 | -28.5 | NP_954934 | 5' arm 3' arm | ||
| 23796 | - | 82553 | 87 | 19 | -30.4 | NP_954934 | 5' arm 3' arm | ||
| 23795 | - | 81909 | 90 | 20.5 | -25.5 | NP_954931 | 5' arm 3' arm | ||
| 23794 | - | 81652 | 87 | 19.5 | -24.8 | NP_954931 | 5' arm 3' arm | ||
| 23793 | - | 81537 | 89 | 19.5 | -21.5 | NP_954931 | 5' arm 3' arm | ||
| 23792 | - | 81368 | 90 | 21.5 | -20.4 | NP_954931 | 5' arm 3' arm | ||
| 23791 | - | 80798 | 90 | 21.5 | -30.1 | NP_954933 | 5' arm 3' arm | ||
| 23790 | - | 78477 | 89 | 20.5 | -26 | NP_954932 | 5' arm 3' arm | ||
| 23789 | - | 76947 | 90 | 21 | -29.9 | NP_954931 | 5' arm 3' arm | ||
| 23788 | - | 75654 | 89 | 21 | -21.5 | NP_954930 | 5' arm 3' arm | ||
| 23787 | - | 75056 | 90 | 22 | -29.8 | NP_954929 | 5' arm 3' arm | ||
| 23786 | - | 74953 | 85 | 21 | -22.2 | NP_954929 | 5' arm 3' arm | ||
| 23785 | - | 74080 | 89 | 20 | -24.4 | NP_954929 | 5' arm 3' arm | ||
| 23784 | - | 72993 | 87 | 19 | -24.6 | NP_954929 | 5' arm 3' arm | ||
| 23783 | - | 72864 | 90 | 22.5 | -21.3 | NP_954929 | 5' arm 3' arm | ||
| 23782 | - | 71581 | 90 | 21 | -23.3 | NP_954929 | 5' arm 3' arm | ||
| 23781 | - | 71419 | 90 | 20 | -29.8 | NP_954929 | 5' arm 3' arm | ||
| 23780 | - | 70291 | 90 | 24 | -30.4 | NP_954927 | 5' arm 3' arm | ||
| 23779 | - | 69882 | 90 | 19 | -21.9 | NP_954927 | 5' arm 3' arm | ||
| 23778 | - | 69278 | 89 | 19.5 | -21.8 | NP_954927 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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