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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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ID
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strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23817 | - | 96927 | 90 | 19 | -23.7 | NP_954943 | 5' arm 3' arm | ||
| 23816 | - | 96728 | 89 | 20.5 | -24 | NP_954943 | 5' arm 3' arm | ||
| 23815 | - | 96382 | 90 | 22.5 | -34.7 | NP_954943 | 5' arm 3' arm | ||
| 23814 | - | 95134 | 90 | 23 | -22.7 | NP_954942 | 5' arm 3' arm | ||
| 23813 | - | 93957 | 88 | 20.5 | -27.1 | NP_954942 | 5' arm 3' arm | ||
| 23812 | - | 93718 | 89 | 24.5 | -32.6 | NP_954942 | 5' arm 3' arm | ||
| 23811 | - | 93358 | 89 | 21 | -30.3 | NP_954941 | 5' arm 3' arm | ||
| 23810 | - | 93001 | 87 | 20.5 | -26.4 | NP_954941 | 5' arm 3' arm | ||
| 23809 | - | 92805 | 89 | 20 | -25.1 | NP_954941 | 5' arm 3' arm | ||
| 23808 | - | 90874 | 90 | 21.5 | -20.2 | NP_954940 | 5' arm 3' arm | ||
| 23807 | - | 90568 | 88 | 19 | -31 | NP_954940 | 5' arm 3' arm | ||
| 23806 | - | 88994 | 90 | 19.5 | -21.2 | NP_954939 | 5' arm 3' arm | ||
| 23805 | - | 88637 | 89 | 21 | -19.4 | NP_954939 | 5' arm 3' arm | ||
| 23804 | - | 87979 | 89 | 19 | -29.5 | NP_954939 | 5' arm 3' arm | ||
| 23803 | - | 86081 | 90 | 23.5 | -28.5 | NP_954937 | 5' arm 3' arm | ||
| 23802 | - | 85934 | 87 | 20.5 | -26.5 | NP_954937 | 5' arm 3' arm | ||
| 23801 | - | 85839 | 90 | 20 | -22.3 | NP_954936 | 5' arm 3' arm | ||
| 23800 | - | 84844 | 89 | 22.5 | -26.8 | NP_954936 | 5' arm 3' arm | ||
| 23799 | - | 84469 | 89 | 19.5 | -24.5 | NP_954936 | 5' arm 3' arm | ||
| 23798 | - | 83812 | 89 | 21 | -21.2 | NP_954935 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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