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GenBank Identifier | RefSeq Acc. | Name |
10834856 | NC_002577.1 | Gallid herpesvirus 3 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
9586 | + | 2708 | 90 | 25.5 | -30.9 | 5' arm 3' arm | |||
9587 | + | 2851 | 90 | 24.5 | -36.5 | NP_066819 | 5' arm 3' arm | ||
9588 | + | 3140 | 89 | 23 | -23.7 | NP_066819 | 5' arm 3' arm | ||
9589 | + | 4507 | 86 | 21 | -28.1 | 5' arm 3' arm | |||
9590 | + | 4641 | 90 | 19.5 | -22.66 | 5' arm 3' arm | |||
9591 | + | 5111 | 89 | 24.5 | -30.4 | NP_066821 | 5' arm 3' arm | ||
9592 | + | 5495 | 90 | 23 | -29.7 | 5' arm 3' arm | |||
9593 | + | 6629 | 90 | 24 | -22.5 | NP_066897 | 5' arm 3' arm | ||
9594 | + | 8409 | 90 | 26 | -24.1 | NP_066896 | 5' arm 3' arm | ||
9595 | + | 8500 | 90 | 23 | -21.1 | NP_066823 | 5' arm 3' arm | ||
9596 | + | 8801 | 86 | 20 | -21.9 | NP_066824 | 5' arm 3' arm | ||
9597 | + | 9769 | 90 | 27 | -26.4 | NP_066825 | 5' arm 3' arm | ||
9598 | + | 10182 | 87 | 20 | -23.4 | NP_066826 | 5' arm 3' arm | ||
9599 | + | 10604 | 88 | 23 | -29.7 | NP_066826 | 5' arm 3' arm | ||
9600 | + | 10959 | 88 | 20.5 | -28.4 | 5' arm 3' arm | |||
9601 | + | 11138 | 90 | 24 | -21.3 | 5' arm 3' arm | |||
9602 | + | 15549 | 90 | 21.5 | -19.8 | NP_066829 | 5' arm 3' arm | ||
9603 | + | 19100 | 90 | 19.5 | -21.8 | NP_066833 | 5' arm 3' arm | ||
9604 | + | 20996 | 88 | 24.5 | -35.7 | NP_066835 | 5' arm 3' arm | ||
9605 | + | 24740 | 89 | 22.5 | -20.2 | NP_066836 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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