miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
12084824 NC_002641.1 Meleagrid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9868 + 4227 82 23 -33.5 5' arm      3' arm
9882 + 117907 86 20.5 -26.8 5' arm      3' arm
9885 + 119987 90 21 -23.7 5' arm      3' arm
9884 + 119818 86 21 -21.6 5' arm      3' arm
9883 + 118958 88 26 -30.6 5' arm      3' arm
9881 + 117738 89 24.5 -27.1 5' arm      3' arm
9887 + 121391 89 24.5 -24.6 5' arm      3' arm
9889 + 121856 87 23.5 -26.6 5' arm      3' arm
9886 + 121222 90 23 -19.7 5' arm      3' arm
9892 + 122658 89 28 -29 5' arm      3' arm
9906 + 135624 90 20 -22.7 5' arm      3' arm
9908 + 147100 88 24 -30.9 5' arm      3' arm
9866 + 1237 86 20.5 -26.2 5' arm      3' arm
9867 + 2210 86 20.5 -19.7 5' arm      3' arm
9870 + 5696 88 21.5 -28.1 5' arm      3' arm
9904 + 134695 87 21.5 -20.1 5' arm      3' arm
9905 + 135409 88 21.5 -32.6 5' arm      3' arm
9903 + 133597 88 22 -23.1 5' arm      3' arm
9874 + 36828 90 22 -27.3 5' arm      3' arm
9888 + 121711 89 23 -24.6 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.