miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
12084824 NC_002641.1 Meleagrid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9923 - 1831 87 23.5 -26.6 5' arm      3' arm
9895 + 126821 84 23.5 -22.4 NP_073381 5' arm      3' arm
9926 - 2465 90 23 -19.7 5' arm      3' arm
9888 + 121711 89 23 -24.6 5' arm      3' arm
9900 + 130466 87 23 -21.4 NP_073366 5' arm      3' arm
9931 - 7141 88 23 -25.8 NP_073291 5' arm      3' arm
9968 - 152130 87 23 -21.4 NP_073381 5' arm      3' arm
9924 - 1976 89 23 -24.6 5' arm      3' arm
9937 - 70153 90 23 -34.4 NP_073330 5' arm      3' arm
9886 + 121222 90 23 -19.7 5' arm      3' arm
9868 + 4227 82 23 -33.5 5' arm      3' arm
9949 - 119460 82 23 -33.5 5' arm      3' arm
9946 - 115227 81 23 -21.2 NP_073355 5' arm      3' arm
9919 - 787 90 22.5 -24.2 NP_073287 5' arm      3' arm
9893 + 122900 90 22.5 -24.2 NP_073287 5' arm      3' arm
9945 - 109181 76 22 -23.1 NP_073349 5' arm      3' arm
9962 - 136764 90 22 -32.6 NP_073369 5' arm      3' arm
9874 + 36828 90 22 -27.3 5' arm      3' arm
9954 - 125414 88 22 -27.7 NP_073365 5' arm      3' arm
9907 + 145832 90 22 -32.6 NP_073369 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.